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JoAnne L Flynn, PhD

Distinguished Professor and Chair, Microbiology & Molecular Genetics
Distinguished Professor, Immunology

Distinguished Professor, Department of Pediatrics

Professor, Medicine, Division of Infectious Disease
Member, Center for Vaccine Research

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5058 Biomedical Science Tower 3

3501 5th Ave

Pittsburgh, PA 15261

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(412) 624-7743

joanne@pitt.edu

Education and Training

B.S. - Biochemistry, UC Davis (1982)
Ph.D. - Microbial Genetics / Immunology, UC Berkeley (1987, Dennis E. Ohman)
Postdoc - Microbial Genetics / Vaccine Development, Scripps Clinic (1987-1990, Magdalene So)
Postdoc - Immunology / Microbial Pathogenesis, Albert Einstein College of Medicine (1990-1993, Barry Bloom)

Research Interests

Our goal is to define immune mechanisms that enhance resistance to this infection, as well as those that exacerbate pathology.  We study the early, chronic  and latent phase of infection, since it is estimated that 1/3 of the world's population is latently infected, and 10% of infected persons will develop active disease. These studies may lead to improved vaccine development or immunotherapeutic strategies, as well as a clear understanding of the host-pathogen interactions in tuberculosis. Our research encompasses translational studies on drugs, vaccines, and immune modulation of TB

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Infection Dynamics and Protection Models against Mtb

In collaboration with the Vaccine Research Center at the NIAID and the HI-IMPACT branch of the IMPAc-TB consortium, we are looking at correlates of protection in the most robust and effective vaccine model available for TB - intravenous BCG. We also study primary infection dynamics and concomitant immunity, using various NHP models that recapitulate TB disease seen in humans.

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Immunological, Spatial, and Temporal Containment of TB

As part of the HI-IMPACT branch of the IMPAc-TB consortium, we are able to utilize multiple experimental techniques to form a comprehensive picture of disease progression and the role the immune system plays. Diverse areas of expertise help relate extensive data sets from our NHP system. We are drawing on these collaborative resources to analyze the host-pathogen interactions at the core of Mtb infection dynamics and disease control.

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Novel Vaccination Platforms against Mtb infection

Together with the Vaccine Research Center at the NIAID, Ehrt and Schnappinger labs at Cornell, and others, we are studying clinically viable alternatives to the BCG vaccine, as well as other non-traditional yet promising platforms to guide future vaccine candidate design. 

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Drugs and Host-directed Therapies

We are also doing in vitro stuff like antibody opsonization, macrophage clearance and development of antigen responsive CD4 and CD8 cell lines. 

Selected Publications

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Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control.

Immunity (2022). PMID: 35483355

Gideon HP*, Hughes TK*, Tzouanas CN*, Wadsworth MH, Tu AA, Gierahn TM, Peters JM, Hopkins FF, Wei J-R, Kummerlowe C, Grant NL, Nargan K, Phuah JY, Borish HJ, Maiello P, White AG, Winchell CG, Nyquist SK, Ganchua SKC, Myers A, Patel KV, Ameel CL, Cochran CT, Ibrahim S, Tomko JA, Frye LJ, Rosenberg JM, Shih A, Chao M, Klein E, Scanga CA, Ordovas-Montanes J, Berger B, Mattila JT, Madansein R, Love JC, Lin PL, Leslie A, Behar SM, Bryson B, Flynn JL#, Fortune SM#, Shalek AK#

T cell transcription factor expression evolves over time in granulomas from Mycobacterium tuberculosis-infected cynomolgus macaques.

Cell Reports (2022). PMID: 35584684

Grant NL, Maiello P, Klein E, Lin PL, Borish HJ, Tomko J, Frye LJ, White AG, Kirschner DE, Mattila JT, Flynn JL.

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Prevention of tuberculosis in nonhuman primates following intravenous BCG immunization.

Nature (2020). PMID: 31894150

Darrah PA, Zeppa JJ, Maiello P, Hackney JA, Wadsworth MH, Hughes TK, Pokkali S, Swanson PA, Grant NL, Rodgers MA, Kamath M, Causgrove CM, Laddy DJ, Bonavia A, Casimiro D, Lin PL, Klein E, White AG, Scanga CA, Shalek AK, Roederer M*, Flynn JL*, Seder RA*

Concurrent infection with Mycobacterium tuberculosis confers robust protection against secondary infection in macaques.

PLoS Pathogens (2018). PMID: 30312351

Cadena AM, Hopkins FF, Maiello P, Carey AF, Wong EA, Martin CJ, Gideon HP, DiFazio RM, Andersen P, Lin PL, Fortune SM, Flynn JL.

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Lymph nodes are sites of prolonged bacterial persistence during Mycobacterium tuberculosis infection in macaques.

PLoS Pathogens (2018). PMID: 30383808

Ganchua SKC, Cadena AM, Maiello P, Gideon HP, Myers AJ, Junecko BF, Klein EC, Lin PL, Mattila JT, Flynn JL.

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